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|Contents||Bulletin||Scripting in shell and Perl||Network troubleshooting||History||Humor|
|News||Grid Engine||Recommended Links||SGE Troubleshooting||Job stuck in the queue problem||Job or Queue Reported in Error State E||Monitoring and Controlling Jobs|
|Why Won't My Jobs Run ?||Job Post Mortem||Queue states||Starting and Killing SGE Daemons||Monitoring Queues||Queue instance in AU state||Viewing SGE Job Output|
|qmod||qdel||qalter -- Change Job Priority||Submitting parallel OpenMPI jobs||SGE Submit Scripts||SGE preventing oversubscription in two queues for the same hosts||Excluding SGE queue from scheduling|
|qsub||qstat||Enabling schedd_job_info||Execution hosts||SGE hostgroups||SGE Resource Quota Sets||sge_conf|
|Monitoring Queues and Jobs||Starting and Killing SGE Daemons||SGE cheat sheet||Tips||History||Humor||Etc|
qalter -w v <jobid> This command enlists the reasons why a job is not dispatchable in principle.
qstat -u '*'
Sometimes we want to delete a job before its running. For this you can use the
The example deletes the job number 903.
qdel -f 903
To clear error status of the job you can use qmod
Command qmod enables users classified as owners (see queue_conf(5) for details) to modify the state of Grid Engine queues for his/her machine as well as the state of his/her own jobs. This command send a signal to a running job :
qmod -sj | -usf | -cd # suspend | unsuspend | clear error
A manager/operator or root can execute qmod for any queue and job in a cluster but only from administrative hosts. Find additional information concerning wc_queue_list and wc_job_list in sge_types(1).
To disable queue use qmod -d Q. To enable back the queue, you can use qmod -e Q.
qmod -e all.q@node23 # enable node23 in queue all.q (-d == disable)
> qmod -sj 1277 santaklaus - suspended job 1277 > qmod -usj 1277 santaklaus - unsuspended job 1277
# qmod -e comp-pvfs-* Queue "comp-pvfs-0-0.q" has been enabled by email@example.com root - queue "comp-pvfs-0-1.q" is already enabled root - queue "comp-pvfs-0-2.q" is already enabled [root@frontend-0 root]# qstat -f queuename qtype used/tot. load_avg arch states ---------------------------------------------------------------------------- comp-pvfs-0-0.q BIP 0/2 0.10 glinux ---------------------------------------------------------------------------- comp-pvfs-0-1.q BIP 0/2 0.58 glinux ---------------------------------------------------------------------------- comp-pvfs-0-2.q BIP 0/2 0.02 glinux ---------------------------------------------------------------------------- frontend-0.q BIP 0/2 0.01 glinux
For more information in using SGE, please refer to the SGE documentation and the man pages.
qmod [ options ] [ wc_job_range_list | wc_queue_list ]
qalter -- Change Job Priority
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After submitting your job to Grid Engine you may track its status by using either the qstat command, the GUI interface QMON, or by email.Monitoring with qstat
The qstat command provides the status of all jobs and queues in the cluster. The most useful options are:
- qstat: Displays list of all jobs with no queue status information.
- qstat -u hpc1***: Displays list of all jobs belonging to user hpc1***
- qstat -f: gives full information about jobs and queues.
- qstat -j [job_id]: Gives the reason why the pending job (if any) is not being scheduled.
You can refer to the man pages for a complete description of all the options of the qstat command.Monitoring Jobs by Electronic Mail
Another way to monitor your jobs is to make Grid Engine notify you by email on status of the job.
In your batch script or from the command line use the -m option to request that an email should be send and -M option to precise the email address where this should be sent. This will look like:
#$ -M myaddress@work
#$ -m beas
Where the (-m) option can select after which events you want to receive your email. In particular you can select to be notified at the beginning/end of the job, or when the job is aborted/suspended (see the sample script lines above).
And from the command line you can use the same options (for example):
qsub -M myaddress@work -m be job.shHow do I control my jobs
Based on the status of the job displayed, you can control the job by the following actions:
Monitoring and controlling with QMON
Modify a job: As a user, you have certain rights that apply exclusively to your jobs. The Grid Engine command line used is qmod. Check the man pages for the options that you are allowed to use.
- Suspend/(or Resume) a job: This uses the UNIX kill command, and applies only to running jobs, in practice you type
qmod -s/(or-r)job_id (where job_id is given by qstat or qsub).
- Delete a job: You can delete a job that is running or spooled in the queue by using the qdel command like this
qdel job_id (where job_id is given by qstat or qsub).
You can also use the GUI QMON, which gives a convenient window dialog specifically designed for monitoring and controlling jobs, and the buttons are self explanatory.
For further information, see the SGE User's Guide ( PDF, HTML).
You can't directly import a queue from Oracle grid engine to Univa grid engine. The structure of the queue is slightly different.
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